Lectures Beng 123 Winter 2009

Systems Biology and Bioengineering:

Lecture: Tu/Th 9:30 - 10:50 PM in PFBH 161
Section: W 2:00 - 2:50 PM in CENTER 220

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2009 Schedule

Date Topic Lectures
1/6 Introduction to Systems Biology (ch. 1) pdf pdf
1/7 no discussion section this week  
1/8 Kinetics: Basic Concepts (ch. 2) pdf
1/13 The Simulation Procedure (ch. 3) pdf
1/14 Discussion Section - linear algebra review and MATLAB intro  
1/15 Chemical Reactions (ch. 4) pdf pdf w/writeup
1/20 Enzyme Catalysis (ch. 5) pdf pdf w/writeup
1/21 Discussion Section  
1/22 Open Systems (ch. 6) pdf pdf w/writeup
1/27 Orders of Magnitude (ch. 7) pdf pdf w/writeup
1/28 Discussion Section  
1/29 Stoichiometric Texture (ch. 8) pdf pdf w/writeup
2/3 Regulation as Elementary Phenomena (ch. 9) pdf pdf w/writeup
2/4 Discussion Section  
2/5 Metabolic Pathways (ch. 10) pdf pdf w/writeup
2/10 Midterm  
2/11 Discussion Section - project introduction  
2/12 The Stoichiometric Matrix pdf
2/17 S Matrix Topology 12 w/writeup 13
2/18 Discussion Section  
2/19 The Fundamental Subspaces and SVD pdf pdf w/writeup
2/24 The Null(S) and Extreme Pathways pdf
2/25 Discussion Section  
2/26 Constraint-Based Modeling: Philosophy pdf pdf w/writeup
3/3 Finding Optimal States: Linear Programming pdf pdf w/writeup pdf w/updates
/4 Discussion Section - core E. coli and FBA pdf
3/5 Exploring Capabilities/Alternative Optimal Solutions pdf
3/10 Project help session  
3/11 no discussion section this week  
3/12 Final Exam review  
3/17 Final Exam, 8:00 AM  

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Location

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