View the history of COBRA development at the SBRG here

 

In house Organisms:

• Bacillus subtilis
• Escherichia coli
• Haemophilus influenzae
• Helicobacter pylori
• Homo sapiens Build 1 (available at the BiGG database)
• Human Macrophage and Integrated Mtb
• Human red blood cell
• Human cardiac mitochondria
• Human neuron and astrocyte
• Methanosarcina barkeri
• Mouse Cardiomyocyte
• Mycobacterium tuberculosis
• Saccharomyces cerevisiae (baker's yeast)

• Staphylococcus aureus

• Summary of Currently Available Reconstructions:
  A table of currently available genome-scale metabolic reconstructions and their properties. Please send it to us if you would like to add your work to this table.

Current News:

• E. coli, H. pylori, S. aureus, S. cerevisiae, and H. sapiens may now be exported and browsed at the BiGG database. Note: In a few reconstructions, author specified sinks are not present. Please see reconstruction publication for details.
• SBML (Systems Biology Markup Language, sbml.org, level 2 version 1) versions of the in silico reconstructions are now available on each organism page. The script to generate these reconstructions is here.

Downloads

Flux Balance Analysis

Extreme Pathway Analysis

SBML generator - SimPheny output specific

• (A perl program that converts SimPheny output to SBML level 2, version 1)

Core E. coli Model

• The core E. coli model and accompanying files.

Supplemental Data

Other material

• BOP27 sequence