| Publication Title | Authors | Publication Year Sort ascending |
|---|---|---|
| Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. | M. Wang; J.J. Carver; V.V. Phelan; L.M. Sanchez; N. Garg; Y. Peng; D.D. Nguyen; J. Watrous; C.A. Kapono; T. Luzzatto-Knaan; C. Porto; A. Bouslimani; A.V. Melnik; M.J. Meehan; W.T. Liu; M. Crüsemann; P.D. Boudreau; E. Esquenazi; M. Sandoval-Calderón; R.D. Kersten; L.A. Pace; R.A. Quinn; K.R. Duncan; C.C. Hsu; D.J. Floros; R.G. Gavilan; K. Kleigrewe; T. Northen; R.J. Dutton; D. Parrot; E.E. Carlson; B. Aigle; C.F. Michelsen; L. Jelsbak; C. Sohlenkamp; P. Pevzner; A. Edlund; J. McLean; J. Piel; B.T. Murphy; L. Gerwick; C.C. Liaw; Y.L. Yang; H.U. Humpf; M. Maansson; R.A. Keyzers; A.C. Sims; A.R. Johnson; A.M. Sidebottom; B.E. Sedio; A. Klitgaard; C.B. Larson; C.A.Boya P; D. Torres-Mendoza; D.J. Gonzalez; D.B. Silva; L.M. Marques; D.P. Demarque; E. Pociute; E.C. O'Neill; E. Briand; E.J.N. Helfrich; E.A. Granatosky; E. Glukhov; F. Ryffel; H. Houson; H. Mohimani; J.J. Kharbush; Y. Zeng; J.A. Vorholt; K.L. Kurita; P. Charusanti; K.L. McPhail; K.Fog Nielsen; L. Vuong; M. Elfeki; M.F. Traxler; N. Engene; N. Koyama; O.B. Vining; R. Baric; R.R. Silva; S.J. Mascuch; S. Tomasi; S. Jenkins; V. Macherla; T. Hoffman; V. Agarwal; P.G. Williams; J. Dai; R. Neupane; J. Gurr; A.M.C. Rodríguez; A. Lamsa; C. Zhang; K. Dorrestein; B.M. Duggan; J. Almaliti; P.M. Allard; P. Phapale; L.F. Nothias; T. Alexandrov; M. Litaudon; J.L. Wolfender; J.E. Kyle; T.O. Metz; T. Peryea; D.T. Nguyen; D. VanLeer; P. Shinn; A. Jadhav; R. Müller; K.M. Waters; W. Shi; X. Liu; L. Zhang; R. Knight; P.R. Jensen; B.Ø. Palsson; K. Pogliano; R.G. Linington; M. Gutiérrez; N.P. Lopes; W.H. Gerwick; B.S. Moore; P.C. Dorrestein; N. Bandeira |
2016 |
| What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira. | D.E. Fouts; M.A. Matthias; H. Adhikarla; B. Adler; L. Amorim-Santos; D.E. Berg; D. Bulach; A. Buschiazzo; Y.F. Chang; R.L. Galloway; D.A. Haake; D.H. Haft; R. Hartskeerl; A.I. Ko; P.N. Levett; J. Matsunaga; A.E. Mechaly; J.M. Monk; A.L.T. Nascimento; K.E. Nelson; B. Palsson; S.J. Peacock; M. Picardeau; J.N. Ricaldi; J. Thaipandungpanit; E.A. Wunder; F. Yang; J.J. Zhang; J.M. Vinetz |
2016 |
| Metabolic fate of adenine in red blood cells during storage in SAGM solution. | G. Paglia; O.E. Sigurjónsson; A. Bordbar; O. Rolfsson; M. Magnúsdóttir; S. Palsson; K. Wichuk; S. Gudmundsson; B.O. Palsson |
2016 |
| Solving puzzles with missing pieces: The power of systems biology | J.T. Yurkovich; B.O. Palsson |
2016 |
| A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism. | N. Mih; E. Brunk; A. Bordbar; B.O. Palsson |
2016 |
| Identified metabolic signature for assessing red blood cell unit quality is associated with endothelial damage markers and clinical outcomes. | A. Bordbar; P.I. Johansson; G. Paglia; S.J. Harrison; K. Wichuk; M. Magnúsdóttir; S. Valgeirsdottir; M. Gybel-Brask; S.R. Ostrowski; S. Palsson; O. Rolfsson; O.E. Sigurjónsson; M.B. Hansen; S. Gudmundsson; B.O. Palsson |
2016 |
| MID Max: LC-MS/MS Method for Measuring the Precursor and Product Mass Isotopomer Distributions of Metabolic Intermediates and Cofactors for Metabolic Flux Analysis Applications. | D. McCloskey; J.D. Young; S. Xu; B.O. Palsson; A.M. Feist |
2015 |
| Systems biology-guided identification of synthetic lethal gene pairs and its potential use to discover antibiotic combinations | R.K. Aziz; J.M. Monk; R.M. Lewis; S.I. Loh; A. Mishra; A.A. Nagle; C. Satyanarayana; S. Dhakshinamoorthy; M. Luche; D.B. Kitchen; K.A. Andrews; N.L. Fong; H.J. Li; B.O. Palsson; P. Charusanti |
2015 |
| A pH and solvent optimized reverse-phase ion-paring-LC–MS/MS method that leverages multiple scan-types for targeted absolute quantification of intracellular metabolites | D.M. McCloskey; J.A. Gangoiti; B.O. Palsson; A.M. Feist |
2015 |
| Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics | A. Bordbar; D. McCloskey; D.C. Zielinski; N. Sonnenschein; N. Jamshidi; B.O. Palsson |
2015 |
| Decoding the jargon of bottom-up metabolic systems biology. | O. Rolfsson; B.O. Palsson |
2015 |
| Networks of energetic and metabolic interactions define dynamics in microbial communities. | M. Embree; J.K. Liu; M.M. Al-Bassam; K. Zengler |
2015 |
| How to set up collaborations between academia and industrial biotech companies. | J.T. Pronk; S.Y. Lee; J. Lievense; J. Pierce; B. Palsson; M. Uhlen; J. Nielsen |
2015 |
| Optimizing eukaryotic cell hosts for protein production through systems biotechnology and genome-scale modeling. | J.M. Gutierrez; N.E. Lewis |
2015 |
| SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks. | A. Dräger; D.C. Zielinski; R. Keller; M. Rall; J. Eichner; B.O. Palsson; A. Zell |
2015 |
| The architecture of ArgR-DNA complexes at the genome-scale in Escherichia coli. | S. Cho; Y.B. Cho; T.Jin Kang; S.Chang Kim; B. Palsson; B.K. Cho |
2015 |
| Model-driven discovery of synergistic inhibitors against E. coli and S. enterica serovar Typhimurium targeting a novel synthetic lethal pair, aldA and prpC. | R.K. Aziz; V.L. Khaw; J.M. Monk; E. Brunk; R. Lewis; S.I. Loh; A. Mishra; A.A. Nagle; C. Satyanarayana; S. Dhakshinamoorthy; M. Luche; D.B. Kitchen; K.A. Andrews; B.Ø. Palsson; P. Charusanti |
2015 |
| Multidimensional Analytical Approach Based on UHPLC-UV-Ion Mobility-MS for the Screening of Natural Pigments. | T. Pacini; W. Fu; S. Gudmundsson; E. Chiaravalle; S. Brynjolfson; B.O. Palsson; G. Astarita; G. Paglia |
2015 |
| Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways. | Z.A. King; A. Dräger; A. Ebrahim; N. Sonnenschein; N.E. Lewis; B.O. Palsson |
2015 |
| Next-generation genome-scale models for metabolic engineering. | Z.A. King; C.J. Lloyd; A.M. Feist; B.O. Palsson |
2015 |
| Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655. | S.Woo Seo; D. Kim; R. Szubin; B.O. Palsson |
2015 |
| Computing the functional proteome: recent progress and future prospects for genome-scale models. | E.J. O'Brien; B.O. Palsson |
2015 |
| Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data. | L. Yang; J. Tan; E.J. O'Brien; J.M. Monk; D. Kim; H.J. Li; P. Charusanti; A. Ebrahim; C.J. Lloyd; J.T. Yurkovich; B. Du; A. Dräger; A. Thomas; Y. Sun; M.A. Saunders; B.O. Palsson |
2015 |
| Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli. | S.Woo Seo; D. Kim; E.J. O'Brien; R. Szubin; B.O. Palsson |
2015 |
| Model-driven discovery of underground metabolic functions in Escherichia coli. | G.I. Guzman; J. Utrilla; S. Nurk; E. Brunk; J.M. Monk; A. Ebrahim; B.O. Palsson; A.M. Feist |
2015 |
| A Markov chain model for N-linked protein glycosylation - towards a low-parameter tool for model-driven glycoengineering. | P.N. Spahn; A.H. Hansen; H.G. Hansen; J. Arnsdorf; H.F. Kildegaard; N.E. Lewis |
2015 |
| CONDENSED VERSION--Pharmacogenomic and clinical data link non-pharmacokinetic metabolic dysregulation to drug side effect pathogenesis | D.C. Zielinski; F.V. Filipp; A. Bordbar; K. Jensen; J.W. Smith; M.J. Herrgard; M.L. Mo; B.Ø. Palsson |
2015 |
| Engineering of oleaginous organisms for lipid production. | J. Levering; J. Broddrick; K. Zengler |
2015 |
| Adaptive Evolution of Thermotoga maritima Reveals Plasticity of the ABC Transporter Network. | H. Latif; M. Sahin; J. Tarasova; Y. Tarasova; V.A. Portnoy; J. Nogales; K. Zengler |
2015 |
| A streamlined ribosome profiling protocol for the characterization of microorganisms. | H. Latif; R. Szubin; J. Tan; E. Brunk; A. Lechner; K. Zengler; B.O. Palsson |
2015 |