| Utilizing biomarkers to forecast quantitative metabolite concentration profiles in human red blood cells |
J.T. Yurkovich; L. Yang; B.O. Palsson |
2017 |
| Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics. |
A. Bordbar; J.T. Yurkovich; G. Paglia; O. Rolfsson; O.E. Sigurjónsson; B.O. Palsson |
2017 |
| Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation |
K. Chen; Y. Gao; N. Mih; E.J. ’ Brien; L. Yang; B.O. Palsson |
2017 |
| Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells. |
J.T. Yurkovich; L. Yang; B.O. Palsson |
2017 |
| A Padawan Programmer’s Guide to Developing Software Libraries |
J.T. Yurkovich; B.J. Yurkovich; A. Draeger; B.O. Palsson; Z.A. King |
2017 |
| Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring. |
C.P. Long; J.E. Gonzalez; A.M. Feist; B.O. Palsson; M.R. Antoniewicz |
2017 |
| A Model for Designing Adaptive Laboratory Evolution Experiments. |
R.A. LaCroix; B.O. Palsson; A.M. Feist |
2017 |
| Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities. |
X. Fang; A. Sastry; N. Mih; D. Kim; J. Tan; J.T. Yurkovich; C.J. Lloyd; Y. Gao; L. Yang; B.O. Palsson |
2017 |
| Integrated Regulatory and Metabolic Networks of the Marine Diatom Phaeodactylum tricornutum Predict the Response to Rising CO2 Levels. |
J. Levering; C.L. Dupont; A.E. Allen; B.O. Palsson; K. Zengler |
2017 |
| Underground metabolism: network-level perspective and biotechnological potential |
R.A. Notebaart; álint Kintses; A.M. Feist; ázs Papp |
2017 |
| Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism. |
D.C. Zielinski; N. Jamshidi; A.J. Corbett; A. Bordbar; A. Thomas; B.O. Palsson |
2017 |
| Mannose and fructose metabolism in red blood cells during cold storage in SAGM. |
O. Rolfsson; F. Johannsson; M. Magnúsdóttir; G. Paglia; O.E. Sigurjónsson; A. Bordbar; S. Palsson; S. Brynjólfsson; S. Guðmundsson; B. Palsson |
2017 |
| Whole-Genome Sequencing of Invasion-Resistant Cells Identifies Laminin α2 as a Host Factor for Bacterial Invasion. |
X.M. van Wijk; S. Döhrmann; B.M. Hallström; S. Li; B.G. Voldborg; B.X. Meng; K.K. McKee; T.H. van Kuppevelt; P.D. Yurchenco; B.O. Palsson; N.E. Lewis; V. Nizet; J.D. Esko |
2017 |
| COBRAme: A Computational Framework for Building and Manipulating Models of Metabolism and Gene Expression |
C.J. Lloyd; A. Ebrahim; L. Yang; Z.A. King; E. Catoiu; E.J. O'Brien; J.K. Liu; B.O. Palsson |
2017 |
| Metabolic Models of Protein Allocation Call for the Kinetome. |
A. Nilsson; J. Nielsen; B.O. Palsson |
2017 |
| Topological and Kinetic Determinants of the Modal Matrices of Dynamic Models of Metabolism |
B. Du; D.C. Zielinski; B.O. Palsson |
2017 |
| Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli. |
C.P. Long; J.E. Gonzalez; A.M. Feist; B.O. Palsson; M.R. Antoniewicz |
2017 |
| Expanding The Computable Reactome In Pseudomonas putida Reveals Metabolic Cycles Providing Robustness |
J. Nogales; S. Gudmundsson; E. Duque; J.Lewis Ramos; B.O. Palsson |
2017 |
| Antibiotic-Induced Changes to the Host Metabolic Environment Inhibit Drug Efficacy and Alter Immune Function. |
J.H. Yang; P. Bhargava; D. McCloskey; N. Mao; B.O. Palsson; J.J. Collins |
2017 |
| Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655. |
S.Woo Seo; Y. Gao; D. Kim; R. Szubin; J. Yang; B.K. Cho; B.O. Palsson |
2017 |
| Multi-omic data integration enables discovery of hidden biological regularities. |
A. Ebrahim; E. Brunk; J. Tan; E.J. O'Brien; D. Kim; R. Szubin; J.A. Lerman; A. Lechner; A. Sastry; A. Bordbar; A.M. Feist; B.O. Palsson |
2016 |
| Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution. |
J. Utrilla; E.J. O'Brien; K. Chen; D. McCloskey; J. Cheung; H. Wang; D. Armenta-Medina; A.M. Feist; B.O. Palsson |
2016 |
| A Phaeodactylum tricornutum literature database for interactive annotation of content |
A.A. Gallina; M. Layer; Z.A. King; J. Levering; B.O. Palsson; K. Zengler; G. Peers |
2016 |
| Acidithiobacillus ferrooxidans's comprehensive model driven analysis of the electron transfer metabolism and synthetic strain design for biomining applications |
M.A. Campodonico; D. Vaisman; J.F. Castro; V. Razmilic; F. Mercado; B.A. Andrews; A.M. Feist; J.A. Asenjo |
2016 |
| Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes. |
J.M. Monk; A. Koza; M.A. Campodonico; D. Machado; J.Miguel Seoane; B.O. Palsson; M.J. Herrgard; A.M. Feist |
2016 |
| A modeling method for increased precision and scope of directly measurable fluxes at a genome-scale. |
D. McCloskey; J.D. Young; S. Xu; B.Ø. Palsson; A.M. Feist |
2016 |
| solveME: fast and reliable solution of nonlinear ME models. |
L. Yang; D. Ma; A. Ebrahim; C.J. Lloyd; M.A. Saunders; B.O. Palsson |
2016 |
| Evolution of E. coli on [U-13C]Glucose Reveals a Negligible Isotopic Influence on Metabolism and Physiology. |
T.E. Sandberg; C.P. Long; J.E. Gonzalez; A.M. Feist; M.R. Antoniewicz; B.O. Palsson |
2016 |
| Biomarkers defining the metabolic age of red blood cells during cold storage. |
G. Paglia; A. D'Alessandro; O. Rolfsson; O.E. Sigurjónsson; A. Bordbar; S. Palsson; T. Nemkov; K.C. Hansen; S. Gudmundsson; B.O. Palsson |
2016 |
| Systems biology of the structural proteome. |
E. Brunk; N. Mih; J. Monk; Z. Zhang; E.J. O'Brien; S.E. Bliven; K. Chen; R.L. Chang; P.E. Bourne; B.O. Palsson |
2016 |