| Optoinjection for efficient targeted delivery of a broad range of compounds and macromolecules into diverse cell types. |
I.B. Clark; E.G. Hanania; J. Stevens; M. Gallina; A. Fieck; R. Brandes; B.Ø. Palsson; M.R. Koller |
2006 |
| Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. |
C.D. Herring; A. Raghunathan; C. Honisch; T. Patel; K.M. Applebee; A.R. Joyce; T.J. Albert; F.R. Blattner; D. Boom; C.R. Cantor; B.Ø. Palsson |
2006 |
| Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition. |
C.L. Barrett; N.D. Price; B.Ø. Palsson |
2006 |
| Systems approach to refining genome annotation. |
J.L. Reed; T.R. Patel; K.H. Chen; A.R. Joyce; K.M. Applebee; C.D. Herring; O.T. Bui; E.M. Knight; S. Fong; B.Ø. Palsson |
2006 |
| Systems biology of the human red blood cell. |
N. Jamshidi; B.Ø. Palsson |
2006 |
| Candidate states of Helicobacter pylori's genome-scale metabolic network upon application of "loop law" thermodynamic constraints. |
N.D. Price; I. Thiele; B.Ø. Palsson |
2006 |
| Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae. |
M.J. Herrgard; B.S. Lee; V.A. Portnoy; B.Ø. Palsson |
2006 |
| Iterative reconstruction of transcriptional regulatory networks: an algorithmic approach. |
C.L. Barrett; B.Ø. Palsson |
2006 |
| Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri. |
A.M. Feist; J.C.M. Scholten; B.Ø. Palsson; F.J. Brockman; T. Ideker |
2006 |
| Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes. |
S. Fong; A. Nanchen; B.Ø. Palsson; U. Sauer |
2006 |
| Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains. |
Q. Hua; A.R. Joyce; S. Fong; B.Ø. Palsson |
2006 |
| Systems biology of SNPs. |
N. Jamshidi; B.Ø. Palsson |
2006 |
| The econometrics of evolution. |
S. Fong; A.R. Joyce; B.Ø. Palsson |
2005 |
| Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet. |
I. Thiele; N.D. Price; T.D. Vo; B.Ø. Palsson |
2005 |
| Properties of metabolic networks: structure versus function. |
R. Mahadevan; B.Ø. Palsson |
2005 |
| Expa: a program for calculating extreme pathways in biochemical reaction networks. |
S.L. Bell; B.Ø. Palsson |
2005 |
| k-Cone analysis: determining all candidate values for kinetic parameters on a network scale. |
I. Famili; R. Mahadevan; B.Ø. Palsson |
2005 |
| Reconstruction of cellular signalling networks and analysis of their properties. |
J.A. Papin; T. Hunter; B.Ø. Palsson; S. Subramaniam |
2005 |
| Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation. |
S.A. Becker; B.Ø. Palsson |
2005 |
| Automated in situ measurement of cell-specific antibody secretion and laser-mediated purification for rapid cloning of highly-secreting producers. |
E.G. Hanania; A. Fieck; J. Stevens; L.J. Bodzin; B.Ø. Palsson; M.R. Koller |
2005 |
| In silico design and adaptive evolution of Escherichia coli for production of lactic acid. |
S. Fong; A.P. Burgard; C.D. Herring; E.M. Knight; F.R. Blattner; C.D. Maranas; B.Ø. Palsson |
2005 |
| Untangling the web of functional and physical interactions in yeast. |
M.J. Herrgard; B.Ø. Palsson |
2005 |
| Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants. |
I. Thiele; T.D. Vo; N.D. Price; B.Ø. Palsson |
2005 |
| Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays. |
C.D. Herring; M. Raffaelle; T.E. Allen; E.I. Kanin; R. Landick; A.Z. Ansari; B.Ø. Palsson |
2005 |
| Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. |
S. Fong; A.R. Joyce; B.Ø. Palsson |
2005 |
| The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states. |
C.L. Barrett; C.D. Herring; J.L. Reed; B.Ø. Palsson |
2005 |
| Reconstruction of microbial transcriptional regulatory networks. |
M.J. Herrgard; M.W. Covert; B.Ø. Palsson |
2004 |
| Hierarchical thinking in network biology: the unbiased modularization of biochemical networks. |
J.A. Papin; J.L. Reed; B.Ø. Palsson |
2004 |
| In Silico Metabolic Model and Protein Expression of Haemophilus influenzae Strain Rd KW20 in Rich Medium. |
A. Raghunathan; N.D. Price; M.Y. Galperin; K.S. Makarova; S. Purvine; A.F. Picone; T. Cherny; T. Xie; T.J. Reilly; R. Munson; R.E. Tyler; B.J. Akerley; A.L. Smith; B.Ø. Palsson; E. Kolker |
2004 |
| Integrating high-throughput and computational data elucidates bacterial networks. |
M.W. Covert; E.M. Knight; J.L. Reed; M.J. Herrgard; B.Ø. Palsson |
2004 |