| Experimental and computational assessment of conditionally essential genes in Escherichia coli. |
A.R. Joyce; J.L. Reed; A. White; R. Edwards; A.L. Osterman; T. Baba; H. Mori; S.A. Lesely; B.Ø. Palsson; S. Agarwalla |
2006 |
| Optoinjection for efficient targeted delivery of a broad range of compounds and macromolecules into diverse cell types. |
I.B. Clark; E.G. Hanania; J. Stevens; M. Gallina; A. Fieck; R. Brandes; B.Ø. Palsson; M.R. Koller |
2006 |
| Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. |
C.D. Herring; A. Raghunathan; C. Honisch; T. Patel; K.M. Applebee; A.R. Joyce; T.J. Albert; F.R. Blattner; D. Boom; C.R. Cantor; B.Ø. Palsson |
2006 |
| Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition. |
C.L. Barrett; N.D. Price; B.Ø. Palsson |
2006 |
| Systems approach to refining genome annotation. |
J.L. Reed; T.R. Patel; K.H. Chen; A.R. Joyce; K.M. Applebee; C.D. Herring; O.T. Bui; E.M. Knight; S. Fong; B.Ø. Palsson |
2006 |
| In silico design and adaptive evolution of Escherichia coli for production of lactic acid. |
S. Fong; A.P. Burgard; C.D. Herring; E.M. Knight; F.R. Blattner; C.D. Maranas; B.Ø. Palsson |
2005 |
| Untangling the web of functional and physical interactions in yeast. |
M.J. Herrgard; B.Ø. Palsson |
2005 |
| Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants. |
I. Thiele; T.D. Vo; N.D. Price; B.Ø. Palsson |
2005 |
| Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays. |
C.D. Herring; M. Raffaelle; T.E. Allen; E.I. Kanin; R. Landick; A.Z. Ansari; B.Ø. Palsson |
2005 |
| Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. |
S. Fong; A.R. Joyce; B.Ø. Palsson |
2005 |
| The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states. |
C.L. Barrett; C.D. Herring; J.L. Reed; B.Ø. Palsson |
2005 |
| The econometrics of evolution. |
S. Fong; A.R. Joyce; B.Ø. Palsson |
2005 |
| Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet. |
I. Thiele; N.D. Price; T.D. Vo; B.Ø. Palsson |
2005 |
| Properties of metabolic networks: structure versus function. |
R. Mahadevan; B.Ø. Palsson |
2005 |
| Expa: a program for calculating extreme pathways in biochemical reaction networks. |
S.L. Bell; B.Ø. Palsson |
2005 |
| k-Cone analysis: determining all candidate values for kinetic parameters on a network scale. |
I. Famili; R. Mahadevan; B.Ø. Palsson |
2005 |
| Reconstruction of cellular signalling networks and analysis of their properties. |
J.A. Papin; T. Hunter; B.Ø. Palsson; S. Subramaniam |
2005 |
| Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation. |
S.A. Becker; B.Ø. Palsson |
2005 |
| Automated in situ measurement of cell-specific antibody secretion and laser-mediated purification for rapid cloning of highly-secreting producers. |
E.G. Hanania; A. Fieck; J. Stevens; L.J. Bodzin; B.Ø. Palsson; M.R. Koller |
2005 |
| Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states. |
J.L. Reed; B.Ø. Palsson |
2004 |
| Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae. |
N.C. Duarte; B.Ø. Palsson; P. Fu |
2004 |
| High-throughput laser-mediated in situ cell purification with high purity and yield. |
M.R. Koller; E.G. Hanania; J. Stevens; T.M. Eisfeld; G.C. Sasaki; A. Fieck; B.Ø. Palsson |
2004 |
| Topological analysis of mass-balanced signaling networks: a framework to obtain network properties including crosstalk. |
J.A. Papin; B.Ø. Palsson |
2004 |
| Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes. |
S. Fong; B.Ø. Palsson |
2004 |
| Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies. |
N.D. Price; J. Schellenberger; B.Ø. Palsson |
2004 |
| Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the Escherichia coli spectrum. |
S.J. Wiback; R. Mahadevan; B.Ø. Palsson |
2004 |
| The evolution of molecular biology into systems biology. |
H.V. Westerhoff; B.Ø. Palsson |
2004 |
| In silico biotechnology. Era of reconstruction and interrogation. |
B.Ø. Palsson |
2004 |
| Genome-scale models of microbial cells: evaluating the consequences of constraints. |
N.D. Price; J.L. Reed; B.Ø. Palsson |
2004 |
| Reconstruction of microbial transcriptional regulatory networks. |
M.J. Herrgard; M.W. Covert; B.Ø. Palsson |
2004 |