| Transcriptional regulation of the fad regulon genes of Escherichia coli by ArcA. |
B.K. Cho; E.M. Knight; B.Ø. Palsson |
2006 |
| Towards multidimensional genome annotation. |
J.L. Reed; I. Famili; I. Thiele; B.Ø. Palsson |
2006 |
| Isotopomer analysis of myocardial substrate metabolism: a systems biology approach. |
T.D. Vo; B.Ø. Palsson |
2006 |
| PCR-based tandem epitope tagging system for Escherichia coli genome engineering. |
B.K. Cho; E.M. Knight; B.Ø. Palsson |
2006 |
| Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling. |
R. Mahadevan; D.R. Bond; J.E. Butler; A. Esteve-Nuñez; M.V. Coppi; B.Ø. Palsson; C.H. Schilling; D.R. Lovley |
2006 |
| Matrix formalism to describe functional states of transcriptional regulatory systems. |
E.P. Gianchandani; J.A. Papin; N.D. Price; A.R. Joyce; B.Ø. Palsson |
2006 |
| The model organism as a system: integrating 'omics' data sets. |
A.R. Joyce; B.Ø. Palsson |
2006 |
| Systems biology as a foundation for genome-scale synthetic biology. |
C.L. Barrett; T.Y. Kim; H.U. Kim; B.Ø. Palsson; S.Y. Lee |
2006 |
| Metabolite coupling in genome-scale metabolic networks. |
S.A. Becker; N.D. Price; B.Ø. Palsson |
2006 |
| Experimental and computational assessment of conditionally essential genes in Escherichia coli. |
A.R. Joyce; J.L. Reed; A. White; R. Edwards; A.L. Osterman; T. Baba; H. Mori; S.A. Lesely; B.Ø. Palsson; S. Agarwalla |
2006 |
| Optoinjection for efficient targeted delivery of a broad range of compounds and macromolecules into diverse cell types. |
I.B. Clark; E.G. Hanania; J. Stevens; M. Gallina; A. Fieck; R. Brandes; B.Ø. Palsson; M.R. Koller |
2006 |
| Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. |
C.D. Herring; A. Raghunathan; C. Honisch; T. Patel; K.M. Applebee; A.R. Joyce; T.J. Albert; F.R. Blattner; D. Boom; C.R. Cantor; B.Ø. Palsson |
2006 |
| Automated in situ measurement of cell-specific antibody secretion and laser-mediated purification for rapid cloning of highly-secreting producers. |
E.G. Hanania; A. Fieck; J. Stevens; L.J. Bodzin; B.Ø. Palsson; M.R. Koller |
2005 |
| In silico design and adaptive evolution of Escherichia coli for production of lactic acid. |
S. Fong; A.P. Burgard; C.D. Herring; E.M. Knight; F.R. Blattner; C.D. Maranas; B.Ø. Palsson |
2005 |
| Untangling the web of functional and physical interactions in yeast. |
M.J. Herrgard; B.Ø. Palsson |
2005 |
| Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants. |
I. Thiele; T.D. Vo; N.D. Price; B.Ø. Palsson |
2005 |
| Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays. |
C.D. Herring; M. Raffaelle; T.E. Allen; E.I. Kanin; R. Landick; A.Z. Ansari; B.Ø. Palsson |
2005 |
| Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. |
S. Fong; A.R. Joyce; B.Ø. Palsson |
2005 |
| The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states. |
C.L. Barrett; C.D. Herring; J.L. Reed; B.Ø. Palsson |
2005 |
| The econometrics of evolution. |
S. Fong; A.R. Joyce; B.Ø. Palsson |
2005 |
| Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet. |
I. Thiele; N.D. Price; T.D. Vo; B.Ø. Palsson |
2005 |
| Properties of metabolic networks: structure versus function. |
R. Mahadevan; B.Ø. Palsson |
2005 |
| Expa: a program for calculating extreme pathways in biochemical reaction networks. |
S.L. Bell; B.Ø. Palsson |
2005 |
| k-Cone analysis: determining all candidate values for kinetic parameters on a network scale. |
I. Famili; R. Mahadevan; B.Ø. Palsson |
2005 |
| Reconstruction of cellular signalling networks and analysis of their properties. |
J.A. Papin; T. Hunter; B.Ø. Palsson; S. Subramaniam |
2005 |
| Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation. |
S.A. Becker; B.Ø. Palsson |
2005 |
| Comparison of network-based pathway analysis methods. |
J.A. Papin; J. Stelling; N.D. Price; S. Klamt; S. Schuster; B.Ø. Palsson |
2004 |
| Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states. |
J.L. Reed; B.Ø. Palsson |
2004 |
| Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae. |
N.C. Duarte; B.Ø. Palsson; P. Fu |
2004 |
| High-throughput laser-mediated in situ cell purification with high purity and yield. |
M.R. Koller; E.G. Hanania; J. Stevens; T.M. Eisfeld; G.C. Sasaki; A. Fieck; B.Ø. Palsson |
2004 |