| Exploiting adaptive laboratory evolution of Streptomyces clavuligerus for antibiotic discovery and overproduction. |
P. Charusanti; N.L. Fong; H. Nagarajan; A.R. Pereira; H.J. Li; E.A. Abate; Y. Su; W.H. Gerwick; B.O. Palsson |
2012 |
| Systems biology of stored blood cells: can it help to extend the expiration date? |
G. Paglia; B.Ø. Palsson; O.E. Sigurjonsson |
2012 |
| Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis. |
J. Nogales; S. Gudmundsson; E.M. Knight; B.O. Palsson; I. Thiele |
2012 |
| Proteomic analysis of Chinese hamster ovary cells. |
D. Baycin-Hizal; D.L. Tabb; R. Chaerkady; L. Chen; N.E. Lewis; H. Nagarajan; V. Sarkaria; A. Kumar; D. Wolozny; J. Colao; E. Jacobson; Y. Tian; R.N. O'Meally; S.S. Krag; R.N. Cole; B.O. Palsson; H. Zhang; M. Betenbaugh |
2012 |
| Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. |
N.E. Lewis; H. Nagarajan; B.O. Palsson |
2012 |
| Monitoring metabolites consumption and secretion in cultured cells using ultra-performance liquid chromatography quadrupole-time of flight mass spectrometry (UPLC-Q-ToF-MS). |
G. Paglia; S. Hrafnsdóttir; M. Magnúsdóttir; R.M.T. Fleming; S. Thorlacius; B.Ø. Palsson; I. Thiele |
2012 |
| MODELING HOST-PATHOGEN INTERACTIONS: COMPUTATIONAL BIOLOGY AND BIOINFORMATICS FOR INFECTIOUS DISEASE RESEARCH. |
J.E. McDermott; P. Braun; R. Bonneau; D.R. Hyduke |
2012 |
| Anaerobic utilization of toluene by marine alpha- and gammaproteobacteria reducing nitrate. |
K. Alain; J. Harder; F. Widdel; K. Zengler |
2012 |
| Using the reconstructed genome-scale human metabolic network to study physiology and pathology. |
A. Bordbar; B.O. Palsson |
2012 |
| UPLC-UV-MS(E) analysis for quantification and identification of major carotenoid and chlorophyll species in algae. |
W. Fu; M. Magnúsdóttir; S. Brynjólfson; B.O. Palsson; G. Paglia |
2012 |
| Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex. |
D.A. Ravcheev; X. Li; H. Latif; K. Zengler; S.A. Leyn; Y.D. Korostelev; A.E. Kazakov; P.S. Novichkov; A.L. Osterman; D.A. Rodionov |
2012 |
| Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features. |
J.H. Seo; J.S.J. Hong; D. Kim; B.K. Cho; T.W. Huang; S.F. Tsai; B.O. Palsson; P. Charusanti |
2012 |
| A road map for the development of community systems (CoSy) biology. |
K. Zengler; B.O. Palsson |
2012 |
| Multiscale Modeling of Metabolism and Macromolecular Synthesis in E. coli and Its Application to the Evolution of Codon Usage. |
I. Thiele; R.M.T. Fleming; R. Que; A. Bordbar; D. Diep; B.O. Palsson |
2012 |
| Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence. |
S.J. Ho Sui; R. Lo; A.R. Fernandes; M.D.G. Caulfield; J.A. Lerman; L. Xie; P.E. Bourne; D.L. Baillie; F.S.L. Brinkman |
2012 |
| Network context and selection in the evolution to enzyme specificity. |
H. Nam; N.E. Lewis; J.A. Lerman; D.H. Lee; R.L. Chang; D. Kim; B.O. Palsson |
2012 |
| Predicting outcomes of steady-state ¹³C isotope tracing experiments using Monte Carlo sampling. |
J. Schellenberger; D.C. Zielinski; W. Choi; S. Madireddi; V. Portnoy; D.A. Scott; J.L. Reed; A.L. Osterman; B. Palsson |
2012 |
| Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling. |
D. Kim; J.S.J. Hong; Y. Qiu; H. Nagarajan; J.H. Seo; B.K. Cho; S.F. Tsai; B.Ø. Palsson |
2012 |
| Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation. |
A. Bordbar; M.L. Mo; E.S. Nakayasu; A.C. Schrimpe-Rutledge; Y.M. Kim; T.O. Metz; M.B. Jones; B.C. Frank; R.D. Smith; S.N. Peterson; D.R. Hyduke; J.N. Adkins; B.O. Palsson |
2012 |
| Adaptive Laboratory Evolution |
B.Ø. Palsson |
2011 |
| Adaptive laboratory evolution--harnessing the power of biology for metabolic engineering. |
V.A. Portnoy; D. Bezdan; K. Zengler |
2011 |
| In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling. |
R. Mahadevan; B.Ø. Palsson; D.R. Lovley |
2011 |
| The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions. |
O. Rolfsson; B.Ø. Palsson; I. Thiele |
2011 |
| A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution. |
P.L. Tremblay; Z.M. Summers; R.H. Glaven; K.P. Nevin; K. Zengler; C.L. Barrett; Y. Qiu; B.O. Palsson; D.R. Lovley |
2011 |
| Microbial laboratory evolution in the era of genome-scale science. |
T.M. Conrad; N.E. Lewis; B.Ø. Palsson |
2011 |
| An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92. |
P. Charusanti; S. Chauhan; K. McAteer; J.A. Lerman; D.R. Hyduke; V.L. Motin; C. Ansong; J.N. Adkins; B.O. Palsson |
2011 |
| A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011. |
J.D. Orth; T.M. Conrad; J. Na; J.A. Lerman; H. Nam; A.M. Feist; B.Ø. Palsson |
2011 |
| A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology. |
A. Bordbar; A.M. Feist; R. Usaite-Black; J. Woodcock; B.O. Palsson; I. Famili |
2011 |
| A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. |
I. Thiele; D.R. Hyduke; B. Steeb; G. Fankam; D.K. Allen; S. Bazzani; P. Charusanti; F.C. Chen; R.M.T. Fleming; C.A. Hsiung; S.C.J. De Keersmaecker; Y.C. Liao; K. Marchal; M.L. Mo; E. Özdemir; A. Raghunathan; J.L. Reed; Sil Shin; S. Sigurbjörnsdóttir; J. Steinmann; S. Sudarsan; N. Swainston; I.M. Thijs; K. Zengler; B.O. Palsson; J.N. Adkins; D. Bumann |
2011 |
| Cumulative number of cell divisions as a meaningful timescale for adaptive laboratory evolution of Escherichia coli. |
D.H. Lee; A.M. Feist; C.L. Barrett; B.Ø. Palsson |
2011 |