| Publication Title Sort descending | Authors | Publication Year |
|---|---|---|
| Metabolic homeostasis and growth in abiotic cells | Akbari A, Palsson BO |
2023 |
| Impact of insertion sequences on convergent evolution of Shigella species | Hawkey J, Monk JM, Billman-Jacobe H, Palsson B, Holt KE |
2020 |
| Redefining fundamental concepts of transcription initiation in bacteria | Mejía-Almonte C, Busby SJW, Wade JT, et al. |
2020 |
| A biochemically-interpretable machine learning classifier for microbial GWAS | Kavvas ES, Yang L, Monk JM, Heckmann D, Palsson BO |
2020 |
| A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution. | P.L. Tremblay; Z.M. Summers; R.H. Glaven; K.P. Nevin; K. Zengler; C.L. Barrett; Y. Qiu; B.O. Palsson; D.R. Lovley |
2011 |
| A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. | I. Thiele; D.R. Hyduke; B. Steeb; G. Fankam; D.K. Allen; S. Bazzani; P. Charusanti; F.C. Chen; R.M.T. Fleming; C.A. Hsiung; S.C.J. De Keersmaecker; Y.C. Liao; K. Marchal; M.L. Mo; E. Özdemir; A. Raghunathan; J.L. Reed; Sil Shin; S. Sigurbjörnsdóttir; J. Steinmann; S. Sudarsan; N. Swainston; I.M. Thijs; K. Zengler; B.O. Palsson; J.N. Adkins; D. Bumann |
2011 |
| A community-driven global reconstruction of human metabolism. | I. Thiele; N. Swainston; R.M.T. Fleming; A. Hoppe; S. Sahoo; M.K. Aurich; H. Haraldsdottir; M.L. Mo; O. Rolfsson; M.D. Stobbe; S.G. Thorleifsson; R. Agren; C. Bölling; S. Bordel; A.K. Chavali; P. Dobson; W.B. Dunn; L. Endler; D. Hala; M. Hucka; D. Hull; D. Jameson; N. Jamshidi; J.J. Jonsson; N. Juty; S. Keating; I. Nookaew; N. Le Novère; N. Malys; A. Mazein; J.A. Papin; N.D. Price; E. Selkov; M.I. Sigurdsson; E. Simeonidis; N. Sonnenschein; K. Smallbone; A. Sorokin; J.H.G.M. Beek; D. Weichart; I. Goryanin; J. Nielsen; H.V. Westerhoff; D.B. Kell; P. Mendes; B.Ø. Palsson |
2013 |
| A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011. | J.D. Orth; T.M. Conrad; J. Na; J.A. Lerman; H. Nam; A.M. Feist; B.Ø. Palsson |
2011 |
| A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types. | Y. Seif; J.M. Monk; N. Mih; H. Tsunemoto; S. Poudel; C. Zuniga; J. Broddrick; K. Zengler; B.O. Palsson |
2019 |
| A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism. | H. Hefzi; K.Siong Ang; M. Hanscho; A. Bordbar; D. Ruckerbauer; M. Lakshmanan; C.A. Orellana; D. Baycin-Hizal; Y. Huang; D. Ley; V.S. Martinez; S. Kyriakopoulos; N.E. Jiménez; D.C. Zielinski; L.E. Quek; T. Wulff; J. Arnsdorf; S. Li; J.Seong Lee; G. Paglia; N. Loira; P.N. Spahn; L.E. Pedersen; J.M. Gutierrez; Z.A. King; A.Mathilde Lund; H. Nagarajan; A. Thomas; A.M. Abdel-Haleem; J. Zanghellini; H.F. Kildegaard; B.G. Voldborg; Z.P. Gerdtzen; M.J. Betenbaugh; B.O. Palsson; M.R. Andersen; L.K. Nielsen; N. Borth; D.Y. Lee; N.E. Lewis |
2016 |
| A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. | M.J. Herrgard; N. Swainston; P. Dobson; W.B. Dunn; Y.K. Arga; M. Arvas; N. Blüthgen; S. Borger; R. Costenoble; M. Heinemann; M. Hucka; N. Le Novère; P. Li; W. Liebermeister; M.L. Mo; A.P. Oliveira; D. Petranovic; S. Pettifer; E. Simeonidis; K. Smallbone; I. Spasić; D. Weichart; R. Brent; D.S. Broomhead; H.V. Westerhoff; B. Kirdar; M. Penttilä; E. Klipp; B.Ø. Palsson; U. Sauer; S.G. Oliver; P. Mendes; J. Nielsen; D.B. Kell |
2008 |
| A data-driven approach for timescale decomposition of biochemical reaction networks | Akbari A, Haiman ZB, Palsson BO |
2024 |
| A defined minimal medium for systems analyses of Staphylococcus aureus reveals strain-specific metabolic requirements | Machado H, Weng LL, Dillon N, Seif Y, Holland M, Pekar JE, Monk JM, Nizet V, Palsson BO, Feist AM. |
2019 |
| A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1. | M.I. Sigurdsson; N. Jamshidi; E. Steingrimsson; I. Thiele; B.Ø. Palsson |
2010 |
| A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933. | H. Latif; H.J. Li; P. Charusanti; B.Ø. Palsson; R.K. Aziz |
2014 |
| A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of Streptococcus pyogenes | Hirose Y, Zielinski DC, Poudel S, Rychel K, Baker JL, Toya Y, Yamaguchi M, Heinken A, Thiele I, Kawabata S, Palsson BO, Nizet V. |
2024 |
| A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. | A.M. Feist; C.S. Henry; J.L. Reed; M. Krummenacker; A.R. Joyce; P.D. Karp; L.J. Broadbelt; V. Hatzimanikatis; B.Ø. Palsson |
2007 |
| A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory. | J. Nogales; B.Ø. Palsson; I. Thiele |
2008 |
| A genome-scale, constraint-based approach to systems biology of human metabolism. | M.L. Mo; N. Jamshidi; B.Ø. Palsson |
2007 |
| A logical data representation framework for electricity-driven bioproduction processes. | S.A. Patil; S. Gildemyn; D. Pant; K. Zengler; B.E. Logan; K. Rabaey |
2015 |
| A Macintosh software package for simulation of human red blood cell metabolism. | I.D. Lee; B.Ø. Palsson |
1992 |
| A Markov chain model for N-linked protein glycosylation - towards a low-parameter tool for model-driven glycoengineering. | P.N. Spahn; A.H. Hansen; H.G. Hansen; J. Arnsdorf; H.F. Kildegaard; N.E. Lewis |
2015 |
| A Model for Designing Adaptive Laboratory Evolution Experiments. | R.A. LaCroix; B.O. Palsson; A.M. Feist |
2017 |
| A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century | Bremer E, Calteau A, Danchin A, Harwood C, Helmann JD, Médigue C, Palsson BO, Sekowska A, Vallenet D, Zuniga A, Zuniga C |
2023 |
| A model-driven quantitative metabolomics analysis of aerobic and anaerobic metabolism in E. coli K-12 MG1655 that is biochemically and thermodynamically consistent. | D. McCloskey; J.A. Gangoiti; Z.A. King; R.K. Naviaux; B.A. Barshop; B.O. Palsson; A.M. Feist |
2013 |
| A modeling method for increased precision and scope of directly measurable fluxes at a genome-scale. | D. McCloskey; J.D. Young; S. Xu; B.Ø. Palsson; A.M. Feist |
2016 |
| A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism. | N. Mih; E. Brunk; A. Bordbar; B.O. Palsson |
2016 |
| A multi-scale expression and regulation knowledge base for Escherichia coli | Lamoureux CR, Decker KT, Sastry AV, Rychel K, Gao Y, McConn JL, Zielinski DC, Palsson BO |
2023 |
| A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology. | A. Bordbar; A.M. Feist; R. Usaite-Black; J. Woodcock; B.O. Palsson; I. Famili |
2011 |
| A Padawan Programmer’s Guide to Developing Software Libraries | J.T. Yurkovich; B.J. Yurkovich; A. Draeger; B.O. Palsson; Z.A. King |
2017 |