| Publication Title | Authors | Publication Year Sort ascending |
|---|---|---|
| Model-driven discovery of underground metabolic functions in Escherichia coli. | G.I. Guzman; J. Utrilla; S. Nurk; E. Brunk; J.M. Monk; A. Ebrahim; B.O. Palsson; A.M. Feist |
2015 |
| A Markov chain model for N-linked protein glycosylation - towards a low-parameter tool for model-driven glycoengineering. | P.N. Spahn; A.H. Hansen; H.G. Hansen; J. Arnsdorf; H.F. Kildegaard; N.E. Lewis |
2015 |
| CONDENSED VERSION--Pharmacogenomic and clinical data link non-pharmacokinetic metabolic dysregulation to drug side effect pathogenesis | D.C. Zielinski; F.V. Filipp; A. Bordbar; K. Jensen; J.W. Smith; M.J. Herrgard; M.L. Mo; B.Ø. Palsson |
2015 |
| Engineering of oleaginous organisms for lipid production. | J. Levering; J. Broddrick; K. Zengler |
2015 |
| Adaptive Evolution of Thermotoga maritima Reveals Plasticity of the ABC Transporter Network. | H. Latif; M. Sahin; J. Tarasova; Y. Tarasova; V.A. Portnoy; J. Nogales; K. Zengler |
2015 |
| A streamlined ribosome profiling protocol for the characterization of microorganisms. | H. Latif; R. Szubin; J. Tan; E. Brunk; A. Lechner; K. Zengler; B.O. Palsson |
2015 |
| Investigating Moorella thermoacetica metabolism with a genome-scale constraint-based metabolic model. | A. Islam; K. Zengler; E.A. Edwards; R. Mahadevan; G. Stephanopoulos |
2015 |
| JSBML 1.0: providing a smorgasbord of options to encode systems biology models. | N. Rodriguez; A. Thomas; L. Watanabe; I.Y. Vazirabad; V. Kofia; H.F. Gómez; F. Mittag; J. Matthes; J. Rudolph; F. Wrzodek; E. Netz; A. Diamantikos; J. Eichner; R. Keller; C. Wrzodek; S. Fröhlich; N.E. Lewis; C.J. Myers; N. Le Novère; B.Ø. Palsson; M. Hucka; A. Dräger |
2015 |
| Unraveling interactions in microbial communities - from co-cultures to microbiomes. | J. Tan; C. Zuniga; K. Zengler |
2015 |
| Pharmacogenomic and clinical data link non-pharmacokinetic metabolic dysregulation to drug side effect pathogenesis. | D.C. Zielinski; F.V. Filipp; A. Bordbar; K. Jensen; J.W. Smith; M.J. Herrgard; M.L. Mo; B.O. Palsson |
2015 |
| A logical data representation framework for electricity-driven bioproduction processes. | S.A. Patil; S. Gildemyn; D. Pant; K. Zengler; B.E. Logan; K. Rabaey |
2015 |
| Prediction of intracellular metabolic states from extracellular metabolomic data. | M.K. Aurich; G. Paglia; O. Rolfsson; S. Hrafnsdóttir; M. Magnúsdóttir; M.M. Stefaniak; B.Ø. Palsson; R.M.T. Fleming; I. Thiele |
2015 |
| Do genome-scale models need exact solvers or clearer standards? | A. Ebrahim; E. Almaas; E. Bauer; A. Bordbar; A.P. Burgard; R.L. Chang; A. Dräger; I. Famili; A.M. Feist; R.Mt Fleming; S.S. Fong; V. Hatzimanikatis; M.J. Herrgard; A. Holder; M. Hucka; D. Hyduke; N. Jamshidi; S.Y. Lee; N. Le Novère; J.A. Lerman; N.E. Lewis; D. Ma; R. Mahadevan; C. Maranas; H. Nagarajan; A. Navid; J. Nielsen; L.K. Nielsen; J. Nogales; A. Noronha; C. Pal; B.O. Palsson; J.A. Papin; K.R. Patil; N.D. Price; J.L. Reed; M. Saunders; R.S. Senger; N. Sonnenschein; Y. Sun; I. Thiele |
2015 |
| Using Genome-scale Models to Predict Biological Capabilities. | E.J. O'Brien; J.M. Monk; B.O. Palsson |
2015 |
| MID Max: LC-MS/MS Method for Measuring the Precursor and Product Mass Isotopomer Distributions of Metabolic Intermediates and Cofactors for Metabolic Flux Analysis Applications. | D. McCloskey; J.D. Young; S. Xu; B.O. Palsson; A.M. Feist |
2015 |
| Systems biology-guided identification of synthetic lethal gene pairs and its potential use to discover antibiotic combinations | R.K. Aziz; J.M. Monk; R.M. Lewis; S.I. Loh; A. Mishra; A.A. Nagle; C. Satyanarayana; S. Dhakshinamoorthy; M. Luche; D.B. Kitchen; K.A. Andrews; N.L. Fong; H.J. Li; B.O. Palsson; P. Charusanti |
2015 |
| A pH and solvent optimized reverse-phase ion-paring-LC–MS/MS method that leverages multiple scan-types for targeted absolute quantification of intracellular metabolites | D.M. McCloskey; J.A. Gangoiti; B.O. Palsson; A.M. Feist |
2015 |
| Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics | A. Bordbar; D. McCloskey; D.C. Zielinski; N. Sonnenschein; N. Jamshidi; B.O. Palsson |
2015 |
| Decoding the jargon of bottom-up metabolic systems biology. | O. Rolfsson; B.O. Palsson |
2015 |
| Networks of energetic and metabolic interactions define dynamics in microbial communities. | M. Embree; J.K. Liu; M.M. Al-Bassam; K. Zengler |
2015 |
| How to set up collaborations between academia and industrial biotech companies. | J.T. Pronk; S.Y. Lee; J. Lievense; J. Pierce; B. Palsson; M. Uhlen; J. Nielsen |
2015 |
| Optimizing eukaryotic cell hosts for protein production through systems biotechnology and genome-scale modeling. | J.M. Gutierrez; N.E. Lewis |
2015 |
| SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks. | A. Dräger; D.C. Zielinski; R. Keller; M. Rall; J. Eichner; B.O. Palsson; A. Zell |
2015 |
| The architecture of ArgR-DNA complexes at the genome-scale in Escherichia coli. | S. Cho; Y.B. Cho; T.Jin Kang; S.Chang Kim; B. Palsson; B.K. Cho |
2015 |
| Model-driven discovery of synergistic inhibitors against E. coli and S. enterica serovar Typhimurium targeting a novel synthetic lethal pair, aldA and prpC. | R.K. Aziz; V.L. Khaw; J.M. Monk; E. Brunk; R. Lewis; S.I. Loh; A. Mishra; A.A. Nagle; C. Satyanarayana; S. Dhakshinamoorthy; M. Luche; D.B. Kitchen; K.A. Andrews; B.Ø. Palsson; P. Charusanti |
2015 |
| Multidimensional Analytical Approach Based on UHPLC-UV-Ion Mobility-MS for the Screening of Natural Pigments. | T. Pacini; W. Fu; S. Gudmundsson; E. Chiaravalle; S. Brynjolfson; B.O. Palsson; G. Astarita; G. Paglia |
2015 |
| Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations. | T.E. Sandberg; M. Pedersen; R.A. LaCroix; A. Ebrahim; M. Bonde; M.J. Herrgard; B.O. Palsson; M. Sommer; A.M. Feist |
2014 |
| Effects of abiotic stressors on lutein production in the green microalga Dunaliella salina. | W. Fu; G. Paglia; M. Magnúsdóttir; E.A. Steinarsdóttir; S. Gudmundsson; B.O. Palsson; O.S. Andrésson; S. Brynjólfsson |
2014 |
| Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states. | B.K. Cho; D. Kim; E.M. Knight; K. Zengler; B.O. Palsson |
2014 |
| Ion Mobility-Derived Collision Cross Section As an Additional Measure for Lipid Fingerprinting and Identification. | G. Paglia; P. Angel; J.P. Williams; K. Richardson; H.J. Olivos; W. Thompson; L. Menikarachchi; S. Lai; C. Walsh; A. Moseley; R.S. Plumb; D.F. Grant; B.O. Palsson; J. Langridge; S. Geromanos; G. Astarita |
2014 |