| Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions. |
J.D. Orth; B.O. Palsson |
2012 |
| Exploiting adaptive laboratory evolution of Streptomyces clavuligerus for antibiotic discovery and overproduction. |
P. Charusanti; N.L. Fong; H. Nagarajan; A.R. Pereira; H.J. Li; E.A. Abate; Y. Su; W.H. Gerwick; B.O. Palsson |
2012 |
| Systems biology of stored blood cells: can it help to extend the expiration date? |
G. Paglia; B.Ø. Palsson; O.E. Sigurjonsson |
2012 |
| Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis. |
J. Nogales; S. Gudmundsson; E.M. Knight; B.O. Palsson; I. Thiele |
2012 |
| Technologies and approaches to elucidate and model the virulence program of salmonella. |
J.E. McDermott; H. Yoon; E.S. Nakayasu; T.O. Metz; D.R. Hyduke; A.S. Kidwai; B.O. Palsson; J.N. Adkins; F. Heffron |
2011 |
| Elimination of thermodynamically infeasible loops in steady-state metabolic models. |
J. Schellenberger; N.E. Lewis; B.Ø. Palsson |
2011 |
| iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states. |
A. Bordbar; N. Jamshidi; B.O. Palsson |
2011 |
| Linkage of organic anion transporter-1 to metabolic pathways through integrated "omics"-driven network and functional analysis. |
S.Y. Ahn; N. Jamshidi; M.L. Mo; W. Wu; S.A. Eraly; A. Dnyanmote; K.T. Bush; T.F. Gallegos; D.H. Sweet; B.Ø. Palsson; S.K. Nigam |
2011 |
| Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. |
J. Schellenberger; R. Que; R.M.T. Fleming; I. Thiele; J.D. Orth; A.M. Feist; D.C. Zielinski; A. Bordbar; N.E. Lewis; S. Rahmanian; J. Kang; D.R. Hyduke; B.Ø. Palsson |
2011 |
| The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. |
X. Xu; H. Nagarajan; N.E. Lewis; S. Pan; Z. Cai; X. Liu; W. Chen; M. Xie; W. Wang; S. Hammond; M.R. Andersen; N. Neff; B. Passarelli; W. Koh; C.H. Fan; J. Wang; Y. Gui; K.H. Lee; M.J. Betenbaugh; S.R. Quake; I. Famili; B.O. Palsson; J. Wang |
2011 |
| Deciphering the transcriptional regulatory logic of amino acid metabolism. |
B.K. Cho; S. Federowicz; Y.S. Park; K. Zengler; B.Ø. Palsson |
2011 |
| Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism. |
R.L. Chang; L. Ghamsari; A. Manichaikul; E.F.Y. Hom; S. Balaji; W. Fu; Y. Shen; T. Hao; B.Ø. Palsson; K. Salehi-Ashtiani; J.A. Papin |
2011 |
| Sensitive and accurate identification of protein-DNA binding events in ChIP-chip assays using higher order derivative analysis. |
C.L. Barrett; B.K. Cho; B.O. Palsson |
2011 |
| An experimentally validated genome-scale metabolic reconstruction of Klebsiella pneumoniae MGH 78578, iYL1228. |
Y.C. Liao; T.W. Huang; F.C. Chen; P. Charusanti; J.S.J. Hong; H.Y. Chang; S.F. Tsai; B.O. Palsson; C.A. Hsiung |
2011 |
| Functional and metabolic effects of adaptive glycerol kinase (GLPK) mutants in Escherichia coli. |
K.M. Applebee; A.R. Joyce; T.M. Conrad; D.W. Pettigrew; B.Ø. Palsson |
2011 |
| The role of cellular objectives and selective pressures in metabolic pathway evolution. |
H. Nam; T.M. Conrad; N.E. Lewis |
2011 |
| The PurR regulon in Escherichia coli K-12 MG1655. |
B.K. Cho; S.A. Federowicz; M. Embree; Y.S. Park; D. Kim; B.Ø. Palsson |
2011 |
| Adaptive Laboratory Evolution |
B.Ø. Palsson |
2011 |
| Adaptive laboratory evolution--harnessing the power of biology for metabolic engineering. |
V.A. Portnoy; D. Bezdan; K. Zengler |
2011 |
| In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling. |
R. Mahadevan; B.Ø. Palsson; D.R. Lovley |
2011 |
| The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions. |
O. Rolfsson; B.Ø. Palsson; I. Thiele |
2011 |
| A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution. |
P.L. Tremblay; Z.M. Summers; R.H. Glaven; K.P. Nevin; K. Zengler; C.L. Barrett; Y. Qiu; B.O. Palsson; D.R. Lovley |
2011 |
| Microbial laboratory evolution in the era of genome-scale science. |
T.M. Conrad; N.E. Lewis; B.Ø. Palsson |
2011 |
| An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92. |
P. Charusanti; S. Chauhan; K. McAteer; J.A. Lerman; D.R. Hyduke; V.L. Motin; C. Ansong; J.N. Adkins; B.O. Palsson |
2011 |
| A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011. |
J.D. Orth; T.M. Conrad; J. Na; J.A. Lerman; H. Nam; A.M. Feist; B.Ø. Palsson |
2011 |
| A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology. |
A. Bordbar; A.M. Feist; R. Usaite-Black; J. Woodcock; B.O. Palsson; I. Famili |
2011 |
| A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. |
I. Thiele; D.R. Hyduke; B. Steeb; G. Fankam; D.K. Allen; S. Bazzani; P. Charusanti; F.C. Chen; R.M.T. Fleming; C.A. Hsiung; S.C.J. De Keersmaecker; Y.C. Liao; K. Marchal; M.L. Mo; E. Özdemir; A. Raghunathan; J.L. Reed; Sil Shin; S. Sigurbjörnsdóttir; J. Steinmann; S. Sudarsan; N. Swainston; I.M. Thijs; K. Zengler; B.O. Palsson; J.N. Adkins; D. Bumann |
2011 |
| Cumulative number of cell divisions as a meaningful timescale for adaptive laboratory evolution of Escherichia coli. |
D.H. Lee; A.M. Feist; C.L. Barrett; B.Ø. Palsson |
2011 |
| Structural and operational complexity of the Geobacter sulfurreducens genome. |
Y. Qiu; B.K. Cho; Y.S. Park; D.R. Lovley; B.Ø. Palsson; K. Zengler |
2010 |
| Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli. |
A.M. Feist; D.C. Zielinski; J.D. Orth; J. Schellenberger; M.J. Herrgard; B.Ø. Palsson |
2010 |