| The convex basis of the left null space of the stoichiometric matrix leads to the definition of metabolically meaningful pools. |
I. Famili; B.Ø. Palsson |
2003 |
| Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20. |
E. Kolker; S. Purvine; M.Y. Galperin; S. Stolyar; D.R. Goodlett; A.I. Nesvizhskii; A. Keller; T. Xie; J.K. Eng; E. Yi; L. Hood; A.F. Picone; T. Cherny; B.C. Tjaden; A.F. Siegel; T.J. Reilly; K.S. Makarova; B.Ø. Palsson; A.L. Smith |
2003 |
| Scalable method to determine mutations that occur during adaptive evolution of Escherichia coli. |
A. Raghunathan; B.Ø. Palsson |
2003 |
| Systemic metabolic reactions are obtained by singular value decomposition of genome-scale stoichiometric matrices. |
I. Famili; B.Ø. Palsson |
2003 |
| Reconstructing metabolic flux vectors from extreme pathways: defining the alpha-spectrum. |
S.J. Wiback; R. Mahadevan; B.Ø. Palsson |
2003 |
| An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). |
J.L. Reed; T.D. Vo; C.H. Schilling; B.Ø. Palsson |
2003 |
| Murine Sca-1(+)/Lin(-) cells and human KG1a cells exhibit multiple pseudopod morphologies during migration. |
K. Francis; B.Ø. Palsson; J. Donahue; S. Fong; E. Carrier |
2002 |
| Extreme pathway lengths and reaction participation in genome-scale metabolic networks. |
J.A. Papin; N.D. Price; B.Ø. Palsson |
2002 |
| Metabolic modelling of microbes: the flux-balance approach. |
J.S. Edwards; M.W. Covert; B.Ø. Palsson |
2002 |
| The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy. |
J.A. Papin; N.D. Price; J.S. Edwards; B.Ø. Palsson |
2002 |
| In silico model-driven assessment of the effects of single nucleotide polymorphisms (SNPs) on human red blood cell metabolism. |
N. Jamshidi; S.J. Wiback; B.Ø. Palsson |
2002 |
| H. influenzae Consortium: integrative study of H. influenzae-human interactions. |
E. Kolker; S. Purvine; A. Picone; T. Cherny; B.J. Akerley; R.S. Munson; B.Ø. Palsson; D.A. Daines; A.L. Smith |
2002 |
| Characterizing the metabolic phenotype: a phenotype phase plane analysis. |
J.S. Edwards; R. Ramakrishna; B.Ø. Palsson |
2002 |
| Characterization and efficacy of PKH26 as a probe to study the replication history of the human hematopoietic KG1a progenitor cell line. |
G.M. Lee; S. Fong; D.J. Oh; K. Francis; B.Ø. Palsson |
2002 |
| Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis. |
N.D. Price; J.A. Papin; B.Ø. Palsson |
2002 |
| Transcriptional regulation in constraints-based metabolic models of Escherichia coli. |
M.W. Covert; B.Ø. Palsson |
2002 |
| Description and analysis of metabolic connectivity and dynamics in the human red blood cell. |
K.J. Kauffman; J.D. Pajerowski; N. Jamshidi; B.Ø. Palsson; J.S. Edwards |
2002 |
| Extreme pathway analysis of human red blood cell metabolism. |
S.J. Wiback; B.Ø. Palsson |
2002 |
| Genome-scale metabolic model of Helicobacter pylori 26695. |
C.H. Schilling; M.W. Covert; I. Famili; G.M. Church; J.S. Edwards; B.Ø. Palsson |
2002 |
| Extreme pathways and Kirchhoff's second law. |
N.D. Price; I. Famili; D.A. Beard; B.Ø. Palsson |
2002 |
| Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. |
R.U. Ibarra; J.S. Edwards; B.Ø. Palsson |
2002 |
| Regulation of gene expression in flux balance models of metabolism. |
M.W. Covert; C.H. Schilling; B.Ø. Palsson |
2001 |
| Flux-balance analysis of mitochondrial energy metabolism: consequences of systemic stoichiometric constraints. |
R. Ramakrishna; J.S. Edwards; A. McCulloch; B.Ø. Palsson |
2001 |
| In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. |
J.S. Edwards; R.U. Ibarra; B.Ø. Palsson |
2001 |
| Metabolic modeling of microbial strains in silico. |
M.W. Covert; C.H. Schilling; I. Famili; J.S. Edwards; I.I. Goryanin; E. Selkov; B.Ø. Palsson |
2001 |
| Dynamic simulation of the human red blood cell metabolic network. |
N. Jamshidi; J.S. Edwards; T. Fahland; G.M. Church; B.Ø. Palsson |
2001 |
| Multiple steady states in kinetic models of red cell metabolism. |
J.S. Edwards; B.Ø. Palsson |
2000 |
| Robustness analysis of the Escherichia coli metabolic network. |
J.S. Edwards; B.Ø. Palsson |
2000 |
| Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems. |
C.H. Schilling; J.S. Edwards; D. Letscher; B.Ø. Palsson |
2000 |
| In situ labeling of adherent cells with PKH26. |
G.M. Lee; S. Fong; K. Francis; D.J. Oh; B.Ø. Palsson |
2000 |