| Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. |
N.C. Duarte; M.J. Herrgard; B.Ø. Palsson |
2004 |
| Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data. |
T.D. Vo; H.J. Greenberg; B.Ø. Palsson |
2004 |
| The JAK-STAT signaling network in the human B-cell: an extreme signaling pathway analysis. |
J.A. Papin; B.Ø. Palsson |
2004 |
| Comparison of network-based pathway analysis methods. |
J.A. Papin; J. Stelling; N.D. Price; S. Klamt; S. Schuster; B.Ø. Palsson |
2004 |
| Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states. |
J.L. Reed; B.Ø. Palsson |
2004 |
| Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae. |
N.C. Duarte; B.Ø. Palsson; P. Fu |
2004 |
| High-throughput laser-mediated in situ cell purification with high purity and yield. |
M.R. Koller; E.G. Hanania; J. Stevens; T.M. Eisfeld; G.C. Sasaki; A. Fieck; B.Ø. Palsson |
2004 |
| Topological analysis of mass-balanced signaling networks: a framework to obtain network properties including crosstalk. |
J.A. Papin; B.Ø. Palsson |
2004 |
| Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes. |
S. Fong; B.Ø. Palsson |
2004 |
| Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies. |
N.D. Price; J. Schellenberger; B.Ø. Palsson |
2004 |
| Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the Escherichia coli spectrum. |
S.J. Wiback; R. Mahadevan; B.Ø. Palsson |
2004 |
| The evolution of molecular biology into systems biology. |
H.V. Westerhoff; B.Ø. Palsson |
2004 |
| In silico biotechnology. Era of reconstruction and interrogation. |
B.Ø. Palsson |
2004 |
| Genome-scale models of microbial cells: evaluating the consequences of constraints. |
N.D. Price; J.L. Reed; B.Ø. Palsson |
2004 |
| Reconstruction of microbial transcriptional regulatory networks. |
M.J. Herrgard; M.W. Covert; B.Ø. Palsson |
2004 |
| Hierarchical thinking in network biology: the unbiased modularization of biochemical networks. |
J.A. Papin; J.L. Reed; B.Ø. Palsson |
2004 |
| In Silico Metabolic Model and Protein Expression of Haemophilus influenzae Strain Rd KW20 in Rich Medium. |
A. Raghunathan; N.D. Price; M.Y. Galperin; K.S. Makarova; S. Purvine; A.F. Picone; T. Cherny; T. Xie; T.J. Reilly; R. Munson; R.E. Tyler; B.J. Akerley; A.L. Smith; B.Ø. Palsson; E. Kolker |
2004 |
| Systemic metabolic reactions are obtained by singular value decomposition of genome-scale stoichiometric matrices. |
I. Famili; B.Ø. Palsson |
2003 |
| Reconstructing metabolic flux vectors from extreme pathways: defining the alpha-spectrum. |
S.J. Wiback; R. Mahadevan; B.Ø. Palsson |
2003 |
| An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). |
J.L. Reed; T.D. Vo; C.H. Schilling; B.Ø. Palsson |
2003 |
| Sequence-based analysis of metabolic demands for protein synthesis in prokaryotes. |
T.E. Allen; B.Ø. Palsson |
2003 |
| Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae. |
J. Förster; I. Famili; B.Ø. Palsson; J. Nielsen |
2003 |
| Reconciling gene expression data with known genome-scale regulatory network structures. |
M.J. Herrgard; M.W. Covert; B.Ø. Palsson |
2003 |
| Analysis of metabolic capabilities using singular value decomposition of extreme pathway matrices. |
N.D. Price; J.L. Reed; J.A. Papin; I. Famili; B.Ø. Palsson |
2003 |
| Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets. |
T.E. Allen; M.J. Herrgard; M. Liu; Y. Qiu; J.D. Glasner; F.R. Blattner; B.Ø. Palsson |
2003 |
| Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. |
J. Förster; I. Famili; P. Fu; B.Ø. Palsson; J. Nielsen |
2003 |
| Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model. |
S. Fong; J.Y. Marciniak; B.Ø. Palsson |
2003 |
| Network-based analysis of metabolic regulation in the human red blood cell. |
N.D. Price; J.L. Reed; J.A. Papin; S.J. Wiback; B.Ø. Palsson |
2003 |
| Constraints-based models: regulation of gene expression reduces the steady-state solution space. |
M.W. Covert; B.Ø. Palsson |
2003 |
| Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. |
I. Famili; J. Forster; J. Nielsen; B.Ø. Palsson |
2003 |