| k-Cone analysis: determining all candidate values for kinetic parameters on a network scale. |
I. Famili; R. Mahadevan; B.Ø. Palsson |
2005 |
| Reconstruction of cellular signalling networks and analysis of their properties. |
J.A. Papin; T. Hunter; B.Ø. Palsson; S. Subramaniam |
2005 |
| Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation. |
S.A. Becker; B.Ø. Palsson |
2005 |
| Automated in situ measurement of cell-specific antibody secretion and laser-mediated purification for rapid cloning of highly-secreting producers. |
E.G. Hanania; A. Fieck; J. Stevens; L.J. Bodzin; B.Ø. Palsson; M.R. Koller |
2005 |
| In silico design and adaptive evolution of Escherichia coli for production of lactic acid. |
S. Fong; A.P. Burgard; C.D. Herring; E.M. Knight; F.R. Blattner; C.D. Maranas; B.Ø. Palsson |
2005 |
| Untangling the web of functional and physical interactions in yeast. |
M.J. Herrgard; B.Ø. Palsson |
2005 |
| Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants. |
I. Thiele; T.D. Vo; N.D. Price; B.Ø. Palsson |
2005 |
| Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays. |
C.D. Herring; M. Raffaelle; T.E. Allen; E.I. Kanin; R. Landick; A.Z. Ansari; B.Ø. Palsson |
2005 |
| Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. |
S. Fong; A.R. Joyce; B.Ø. Palsson |
2005 |
| The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states. |
C.L. Barrett; C.D. Herring; J.L. Reed; B.Ø. Palsson |
2005 |
| The econometrics of evolution. |
S. Fong; A.R. Joyce; B.Ø. Palsson |
2005 |
| Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet. |
I. Thiele; N.D. Price; T.D. Vo; B.Ø. Palsson |
2005 |
| Integrating high-throughput and computational data elucidates bacterial networks. |
M.W. Covert; E.M. Knight; J.L. Reed; M.J. Herrgard; B.Ø. Palsson |
2004 |
| Monte Carlo sampling can be used to determine the size and shape of the steady-state flux space. |
S.J. Wiback; I. Famili; H.J. Greenberg; B.Ø. Palsson |
2004 |
| High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12. |
C. Honisch; A. Raghunathan; C.R. Cantor; B.Ø. Palsson; D. Boom |
2004 |
| Flagellar biosynthesis in silico: building quantitative models of regulatory networks. |
M.J. Herrgard; B.Ø. Palsson |
2004 |
| Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. |
N.C. Duarte; M.J. Herrgard; B.Ø. Palsson |
2004 |
| Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data. |
T.D. Vo; H.J. Greenberg; B.Ø. Palsson |
2004 |
| The JAK-STAT signaling network in the human B-cell: an extreme signaling pathway analysis. |
J.A. Papin; B.Ø. Palsson |
2004 |
| Comparison of network-based pathway analysis methods. |
J.A. Papin; J. Stelling; N.D. Price; S. Klamt; S. Schuster; B.Ø. Palsson |
2004 |
| Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states. |
J.L. Reed; B.Ø. Palsson |
2004 |
| Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae. |
N.C. Duarte; B.Ø. Palsson; P. Fu |
2004 |
| High-throughput laser-mediated in situ cell purification with high purity and yield. |
M.R. Koller; E.G. Hanania; J. Stevens; T.M. Eisfeld; G.C. Sasaki; A. Fieck; B.Ø. Palsson |
2004 |
| Topological analysis of mass-balanced signaling networks: a framework to obtain network properties including crosstalk. |
J.A. Papin; B.Ø. Palsson |
2004 |
| Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes. |
S. Fong; B.Ø. Palsson |
2004 |
| Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies. |
N.D. Price; J. Schellenberger; B.Ø. Palsson |
2004 |
| Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the Escherichia coli spectrum. |
S.J. Wiback; R. Mahadevan; B.Ø. Palsson |
2004 |
| The evolution of molecular biology into systems biology. |
H.V. Westerhoff; B.Ø. Palsson |
2004 |
| In silico biotechnology. Era of reconstruction and interrogation. |
B.Ø. Palsson |
2004 |
| Genome-scale models of microbial cells: evaluating the consequences of constraints. |
N.D. Price; J.L. Reed; B.Ø. Palsson |
2004 |